NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265323_10001901

Scaffold Ga0265323_10001901


Overview

Basic Information
Taxon OID3300028653 Open in IMG/M
Scaffold IDGa0265323_10001901 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9851
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y

Sequences

Protein IDFamilyRBSSequence
Ga0265323_100019016F000451AGGAMPRFQTVIRRARFVYSPYTATEMQGFAQVLADSIRTRIQSGQNIYDQAAAPLKPGQPGRRGYPDYKTARGLSPIRDWTWSGHTLRCLKVLTANENRAAIGFLGEALPGRRQTASQIAAYNNRREAQWGVSPRDRQAVLAAFLARPSVIVKVA
Ga0265323_100019018F000335N/AMPASLCTAFTELREYVQIQNQYLDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYSFWVSQNAGLTPFAFYNPFDVASGHQIGSNYDPTGNSTQGRVTVVFRGNWAQATDIARTNVQALELVEVA
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