Scaffold Ga0257128_1099883

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257128_1099883

Scaffold Ga0257128_1099883

Overview

Basic Information
Taxon OID	3300028672 Open in IMG/M
Scaffold ID	Ga0257128_1099883 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	586
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025972	Metagenome / Metatranscriptome	199	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257128_10998831	F025972	AGCAG	MMLVRLLLGAAAIGAVELKQKLILRNTGSEDLAVYFMGALHEGDMSLWDGSEVLNEIVAPGSSHARYVRYNDSFAIRSGDLKWRVRVSLYKNEDPDQPYKVTFHNVMVDEIEQPIELKHHANGYLWIEPNHHVTHSAVGGHEFELRDRDAKDRLAVSVHALGRDEL

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