Scaffold Ga0307276_10000088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307276_10000088

Scaffold Ga0307276_10000088

Overview

Basic Information
Taxon OID	3300028705 Open in IMG/M
Scaffold ID	Ga0307276_10000088 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9705
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001160	Metagenome / Metatranscriptome	762	Y
F055263	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307276_1000008813	F001160	GGCGG	MQVENVIAFVTEEDPAGLEIRVNFGVFAGRDATSAELEELGKLLVPEAGEVSIVGEQRHEISEDAEVVLHQVRVSVSRENVPEDPQERKEFCERLVTLAEIWARQCINERSSEISDL
Ga0307276_100000885	F055263	AGG	MNPARIFALSLMALLVVVAGCGSSPKNVTKAQYQAQLAKSGRAITIAGQQLGKVITIAEFNGAVTDLQQALRDGEKNLKGLQPPANARAANKRLAEAFGDLADALEAVKEARRVSIVKAREALAKLGRSAAIKNGRAAIEKLNQLGYAVDAATP

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