NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307276_10000639

Scaffold Ga0307276_10000639


Overview

Basic Information
Taxon OID3300028705 Open in IMG/M
Scaffold IDGa0307276_10000639 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4388
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0307276_100006391F008327AGGAGMTMPSGDTPEKANDFYLYLNGHQQTTHPVQTWHVDWMSLAWLWGFLAVLVVILFLWVKQYRTTRQRTGIYPVDSFGGWTTEGAGPATAFFLLFTAIVVGFAVALIVGHLVWGQKF
Ga0307276_100006392F002111AGAAGMVVTSVLPFVSYSSMTETVIPAAEWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVNCYTTWDTAGQLEVFLERGYTFERLLADIGSGLGPARSLVMEKVF
Ga0307276_100006393F000280AGAAGGMGQNPDEQPRPARPLFGYRDVGEDVRHGRSAITRAWIVLAILIVIYLAWTLTVYFLEPGL
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