NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307285_10000005

Scaffold Ga0307285_10000005


Overview

Basic Information
Taxon OID3300028712 Open in IMG/M
Scaffold IDGa0307285_10000005 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)196184
Total Scaffold Genes192 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (66.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017066Metagenome / Metatranscriptome243Y
F055613Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0307285_1000000511F017066GGCGGVILPLAHHSALVALPVFAPALIVIVFLLVHRMRERRRWEEEEAEG
Ga0307285_1000000530F055613GGAMKPGSRETIPTISEVVRDATAIVDPEGTDTAVLGFFESFEDDDRPATAAEDLQGELLSTVRGIDPEGDDPAAFAAAAAAVWLATNPSQADNGDHVLREGVRLVFEGSPPEPLAEWLAARGVEL

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