NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307307_10023214

Scaffold Ga0307307_10023214


Overview

Basic Information
Taxon OID3300028718 Open in IMG/M
Scaffold IDGa0307307_10023214 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1727
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F018903Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307307_100232143F001175GGAGMRAVMCGVLLVVAACGPPNPCSGHQFDRLRRYSLPYAGHWVVARGDTLTFPDAPGMSDRFRLGDVILDTATAVTGRECVFRGQIVFRKPRVDTLAVTWFGQPEQAIVSGWPADIGPFAGLSLAWAGGDSLSGSILLDAKLGVQARPGMTARFVAGRSQRLSSAP
Ga0307307_100232144F018903GGAGGLHPQRRLLTLPVMKSILCVVPICCMLACGSDNARRTAADSLTERQKDSILANSKIPNARAVGRAMNAADSMSARIRSSDTVARDTTEF
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