Scaffold Ga0307319_10000001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307319_10000001

Scaffold Ga0307319_10000001

Overview

Basic Information
Taxon OID	3300028722 Open in IMG/M
Scaffold ID	Ga0307319_10000001 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	552716
Total Scaffold Genes	589 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	408 (69.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307319_10000001266	F031439	AGG	MYVIPIVLIILLALIAVAWSPIFALIFFVIGFVGFLAYAGMSRRADEKLAPPEQPGRQPQHQAQGDTGMWGERKPS
Ga0307319_10000001291	F016854	AGG	MASSRLKTLPKPGEVWLSCPPYLMMARIVAVDLDGDTPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0307319_10000001294	F081191	N/A	VSPRKPLPSPEEIVAAIVALADDGYCRRGELEQKFPRLESRDRRRAVRRAVAQGLVIERRGPDGAFHVAVSSEGWNRHRNG
Ga0307319_10000001361	F049823	AGGA	VPSQPVQGAYEVARGIVAPEKIDDALRLLHLDLLQRGASAEELSEWLWGAHWFPHLRERPEILALAESLPDEWRTGRICDPQILLQFPHTGPEPEISFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLIETAEGPAPVEADPGDAIMMTPDLPHSGGINHSGRLRYGVYFRWLAD

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