Basic Information | |
---|---|
Taxon OID | 3300028731 Open in IMG/M |
Scaffold ID | Ga0302301_1000124 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 63902 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (75.32%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002248 | Metagenome / Metatranscriptome | 578 | Y |
F005538 | Metagenome / Metatranscriptome | 397 | Y |
F032939 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0302301_10001241 | F032939 | AGG | MTIEIRDASLQARIRRQLQATGFSSVEEVLLRLLAATPALSS |
Ga0302301_100012410 | F005538 | AGGGGG | MDFQVNDETYFVSLAEDERRWRVFVSTATGAWPIPVYEDAAESGPLVMLQEERHRIPN |
Ga0302301_100012436 | F002248 | AGGAG | MDRRRQSRVFVDLPVQIWGMDTYSRPFIQPASLRTISGRGATLQCVDARLKPGDVIDVLYEGTKAQFRIVWCGKPGTEMAGEVGVENLSTDVALWDVDPVRCAAAAGQG |
⦗Top⦘ |