NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000153

Scaffold Ga0302301_1000153


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000153 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52449
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (61.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001517Metagenome / Metatranscriptome679Y
F001818Metagenome / Metatranscriptome630Y
F010777Metagenome / Metatranscriptome299Y
F105815Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_100015313F001818GGAGMPGEISSQDAQRYRTAWHSYVARRNLVVVLFVSFAFVGFMVAKLRLGELRDLSILLFWIAVYLTGTWWLTEWRCPRCGKIFANRLWTQRCISCGLSKDEVAARARMKS
Ga0302301_100015327F010777GGTGGVRFSALGGRWRLAWVCGLLSGLLLTGCTRKKAEAAPDAVSELQAVSPADPAKFPVLLASKHWSNPYLVVRPEEVGLLTDVTANDEKIVKPEEVLKALAQLPVAAWPYGRAVAILVDAKAASSEQDKIALRRNRGIVAGELQSAHVAIHWIPSS
Ga0302301_100015333F105815AGGCGGLIVRYTELFRSSPEAAVLAVYGLVHLVLLLAKEIAVQVKALLRTLGVK
Ga0302301_100015353F001517GAGMTKSHPTPPPISTADQSLALSTLEPDQLVAAKKHHIPRRHFNGPELAVIWALRLYLLFMMAVVIYQVWTAGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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