NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272446_1043736

Scaffold Ga0272446_1043736


Overview

Basic Information
Taxon OID3300028735 Open in IMG/M
Scaffold IDGa0272446_1043736 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-006-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5772Long. (o)-110.7892Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0272446_10437362F007404GGAGGVDIVEILQLLAAGHSGLTAHEYVWNAVFGAIGAATVYLADTEGEVFLPRYDREHISIELGVFGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLIDKITELVKRGR
Ga0272446_10437363F014738GAGGMKLGMLLQISAFILAFVHPEAAQVAATAVLLLIVIQIDRKRKASRSPRPSD

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