NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302262_10029591

Scaffold Ga0302262_10029591


Overview

Basic Information
Taxon OID3300028743 Open in IMG/M
Scaffold IDGa0302262_10029591 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1905
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001844Metagenome / Metatranscriptome627Y

Sequences

Protein IDFamilyRBSSequence
Ga0302262_100295912F001844N/AMLDWVRSLYDPLSSAKHAGRWIAQLPASEAIAIQREALELVSGFPGSRKEPGPGQVEALLRIDARLEPVVAQLTQQYTANYQKSTAVESRLWHSVFDLVKAFTAAYQIALKSGYPRTQSKRWRATLPWVLVRLAHYKGLDGKFRLFRYSHWIPAQWREFHELYEFARMRGWQREQLLYGVGGFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVSRQLEDWTPTLQLTPPPSEGAPFCVDLAGNAGLRRRDRQHGGGRMLYLDASPVYARIVERMRWLPEQDEEVTPQGDLPSREQRLLLMRLASLFGPDAIAQAPRATRFATDGDVRVVVGLQALTRAVAEIERLPEQARTPGVATSYDEVTQLVNPTANPESVARRIR
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