NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302267_10383860

Scaffold Ga0302267_10383860


Overview

Basic Information
Taxon OID3300028745 Open in IMG/M
Scaffold IDGa0302267_10383860 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)582
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026465Metagenome197N
F059572Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0302267_103838601F059572GGAGMTAMQFSLFDARPSAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLG
Ga0302267_103838602F026465N/AECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ

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