NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302219_10104154

Scaffold Ga0302219_10104154


Overview

Basic Information
Taxon OID3300028747 Open in IMG/M
Scaffold IDGa0302219_10104154 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030530Metagenome / Metatranscriptome185Y
F085254Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0302219_101041542F085254N/AMSSWPEDFSACSLKEVLGWQAENRAWNKELRLKTNSLVNSRLARSISQDDYLANRKLFHEDAAECRRRANILDAQITRRTNGSLSGGPSRGT
Ga0302219_101041543F030530N/ALKGESKLLNSTDVLASIRDLILHLHRNNAPQAELILTDVAGYLKGVMQSGADPASVDMQRTQQTMFAIDEVRMLLSQRDFDGAAVAARDAAKEWRQQPASSAARE

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