NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302219_10304983

Scaffold Ga0302219_10304983


Overview

Basic Information
Taxon OID3300028747 Open in IMG/M
Scaffold IDGa0302219_10304983 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041383Metagenome / Metatranscriptome160Y
F042049Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0302219_103049831F042049N/AVRKHNKVFNTLPLPGTGDQLGFGDDLIEAFYKLTPDEREIVIDIVDRLKPGVTAYDFDDFDLQPAAMKLLTYHRLVLHNGDKQNSVLYARWLSSITMVEKRMTLHLDPGVVPHLERLK
Ga0302219_103049832F041383AGAAGMVIAKETKPSTVEPAKWSFSADGKSLSIDDFLETYRKQGIFYEGKEQWLKGVTKVTWENFFLVCTE

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