NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307349_102672

Scaffold Ga0307349_102672


Overview

Basic Information
Taxon OID3300028749 Open in IMG/M
Scaffold IDGa0307349_102672 Open in IMG/M
Source Dataset NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098758Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0307349_1026722F098758GAGMDNRKALLLGVFFLISILILFSGCNISKEESSPISPKDLCDNIECPNVCKGEDLWNQKCLDGNCVDFVRIESCSEKCGCIVDLCQRVKCSDQCRNEDLWTYKCVDGLCTPDIIKEKCSVQCGCAPKFFYKLIPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEP
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