Scaffold Ga0307297_10001670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307297_10001670

Scaffold Ga0307297_10001670

Overview

Basic Information
Taxon OID	3300028754 Open in IMG/M
Scaffold ID	Ga0307297_10001670 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5315
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031762	Metagenome	181	Y
F062261	Metagenome	131	Y
F090834	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307297_100016703	F031762	AGGAG	MRQPLRHVEDTVTSVVALLALGVVGFFGLIVLLLTLALGF
Ga0307297_100016707	F062261	AGGAGG	MDPRYDLNSWIKQRREEALREAQMRSLAKQGKGDRRTLPFKLSGVGSILSGVLGLFR
Ga0307297_100016708	F090834	AGGA	MVGVSIRIREGASRFDVSIQAQSIRRAVEIAADRYPNADVRVSFPIDGGAFFVEEPASRAAQLSREWPERVAA

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