NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307297_10002720

Scaffold Ga0307297_10002720


Overview

Basic Information
Taxon OID3300028754 Open in IMG/M
Scaffold IDGa0307297_10002720 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4272
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005102Metagenome / Metatranscriptome412Y
F059714Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307297_100027202F005102GGAGGMAEQRHGRYYAQELMMDQDANVRELIQDTLDAGEHHEWHLVGVSDVVAGQGVILFWDTARPGFGRTSR
Ga0307297_100027206F059714GAGGMRKLMMVVALVVVLVPLAAVASLAATGQLIQCRNVLPCTGSKGDDKILERIGDGKHDRIIARVGGDRVLANKYTADTDVVRGGGGTDRINVADGDLLDTANGGKSRDLCIVDARKEAGTSCSSVEVRRP

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