NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302303_10068189

Scaffold Ga0302303_10068189


Overview

Basic Information
Taxon OID3300028776 Open in IMG/M
Scaffold IDGa0302303_10068189 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084926Metagenome111Y
F085923Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0302303_100681891F085923AGGAGMDRRSFFSNMMVAAAFSSALGEIVSPRELLAAAEGDVPQGDHQQFWDDFFDDVDPTKPHAVGARGPGGEPVDQPLSEHVEPEKLPRFFHYDDSAGLRYADKIDRAELPKLDGAAVVSLSLAGFHPSEQDSKKIGDASSAQLQLHASQTQPFAQFIAPLAWATMASVFTSQAKKLPTVQQLNFMDENGSTGTSGSNRILLPGAEGKLALN
Ga0302303_100681892F084926N/AGRANATEDSIAPVIARRILRLGKLRVWQQTPAMVSGVTDWPYHLAIVRANATAKDPLHPSEQYDIRLVATQDEISRRAISPKYIYLFGFDCAANPYQIFPTDETNGIAQGPPLNSDGAFPTTYELMQESVSPPYGADTLFLLATKEKINNLNLLTYDGVIESGSRGAGVDQLMINLNDSGTRGGTSVVTTWQVQQAVVASRP
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