NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307288_10000005

Scaffold Ga0307288_10000005


Overview

Basic Information
Taxon OID3300028778 Open in IMG/M
Scaffold IDGa0307288_10000005 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)203287
Total Scaffold Genes194 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (70.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038895Metagenome / Metatranscriptome165Y
F057346Metagenome / Metatranscriptome136Y
F092512Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307288_10000005148F057346GGAGGVKKPERIGNWSPDGKAERAALRRDYRELTPAQRVEQVFELSRFMSRVAEAGRRRGIA
Ga0307288_10000005150F092512GGGGGMPTFAVRFKGLMTGQERERLAATGIKLEGSRSSMIAGNPETGTVRTGRPIYTVSVEAASKDEALAKVREAIEPDSSNFSGWEAGPL
Ga0307288_1000000539F038895GGCGGLGSDSLPTAVESAKERDLKPLAQESAEKLGLDCRQLEVMERYLLDAWFFGIRTGHTVMIETKMGQTDPTPVILSMQDEFQELMERCGEALNTTVGTTIQAWNYLGQAWIAGAKFWEVEIAARLIESRIGGFDEALQRLSDPE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.