Scaffold Ga0307288_10000013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307288_10000013

Scaffold Ga0307288_10000013

Overview

Basic Information
Taxon OID	3300028778 Open in IMG/M
Scaffold ID	Ga0307288_10000013 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	144083
Total Scaffold Genes	150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	104 (69.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F070416	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307288_1000001328	F005789	N/A	MEGGALMATVVALDSSPANVLRHMRGAIVDAQFGYPEVLHVEIKDPAGETWRLATQDADWTPTDPSELIGQSVEDAHIDEESGELRCKLSNGSLLDVKPARKEADDDPPNWELITPGGILLEFGPGVRWQISSADEPASSRR
Ga0307288_1000001388	F070416	N/A	MIATIVHTDELLQTIAASVIAGIGVTFLFSLGIWGAGQFSELSRSERPVAATAAAVVGAVALLCVAGAVVTGIVVMTHK

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