NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307288_10000013

Scaffold Ga0307288_10000013


Overview

Basic Information
Taxon OID3300028778 Open in IMG/M
Scaffold IDGa0307288_10000013 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144083
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (69.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005789Metagenome / Metatranscriptome390Y
F070416Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307288_1000001328F005789N/AMEGGALMATVVALDSSPANVLRHMRGAIVDAQFGYPEVLHVEIKDPAGETWRLATQDADWTPTDPSELIGQSVEDAHIDEESGELRCKLSNGSLLDVKPARKEADDDPPNWELITPGGILLEFGPGVRWQISSADEPASSRR
Ga0307288_1000001388F070416N/AMIATIVHTDELLQTIAASVIAGIGVTFLFSLGIWGAGQFSELSRSERPVAATAAAVVGAVALLCVAGAVVTGIVVMTHK

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