NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302266_10022307

Scaffold Ga0302266_10022307


Overview

Basic Information
Taxon OID3300028779 Open in IMG/M
Scaffold IDGa0302266_10022307 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3254
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057821Metagenome135N
F098449Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0302266_100223071F098449N/AMNRNFNINGLHSAGTDAGLEPARAQAFVPLVNGGGLIESVTEEQSMQNGAEVESAGRTGKGGRPRKSYDFLIGTVHHFLVIDRIFRRAQNEPYAATTCTRCGTHTECRLRDILSGHTKSCKCLRPEQYLANVGAQADQLPEQKVAQIWSMHFSGAGRRAIAIEHKLAVIVVDFALRRYQRILDGIINTGRALLMATRAVTPQVRDYLRKAEYRFQNVLRRASERAVESDKTCRAWERMMRRYIQDHAQEWHTPIGPDDEVEFLNE
Ga0302266_100223075F057821AGGAGMSIDMNLLSVNADALSTNQNSELPGWNVPSHMAFHIVFDGRLDINGKLDPVIRRPYRDTSRPYNQRRDFMAHETRQVLDDRMPAGVEYGIVTFDGGSKAAREETRRLVEHLSRGWTDNGKRFRCVYGHAADTGFMLFVDAKSSIHGPDDLGIHISSDPKAAKRVRRFFSAHSLMLKGRVIDRAKSPLGKQYAVQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.