Scaffold Ga0307282_10027718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307282_10027718

Scaffold Ga0307282_10027718

Overview

Basic Information
Taxon OID	3300028784 Open in IMG/M
Scaffold ID	Ga0307282_10027718 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2427
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011813	Metagenome	287	Y
F077142	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307282_100277183	F011813	GGA	MTDEPSLDELGERLAGLDAPIRIWREQRDRAFDAAFGPKKGKLSNLMARMPQAANSAAALGVGPRDEVFAVFDQICDLYARSDAALCARIRGIVHEREAHRLLDEYLGYVARILKQGGRPEWLERGIAAASIDDQGRDYRDWLMSLGDLYLSARAARLDPTPVLKRIAERSNADRNPAAPTPTRDVLATFEDSAYFMTSILPQLR
Ga0307282_100277184	F077142	N/A	VPKETTAIVLFVGLAFGLFWGSLSLLLWSANERIPAWIIAPLWLAAEIGTRLPVHPYLAGALAAGFLGLLPAAVFL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.