NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302201_10013164

Scaffold Ga0302201_10013164


Overview

Basic Information
Taxon OID3300028785 Open in IMG/M
Scaffold IDGa0302201_10013164 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5009
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010891Metagenome297Y
F057821Metagenome135N
F098449Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0302201_100131645F098449AGGAMNRNFNINGLHPARADAGLEPARAQAFLPLVDGGGRIESVTEEQSMQNGAVVAIAGRTSKGGRPRKCYDYLIGTVHHFLVIDRIFRRAQNEPYAATTCTRCGTHTECRLRDILSGHTKSCKCLRPEQYLTNVGAQADQLPEQKVAQIWSMHFSGAGRWAIAIEHKLAVIVVDFALRRYQRILDGIINTGRALLMATRAVTPQVRDYLRKAEYRFQNVLRRASERAVESDKTCRAWERMMRRYIQDHAQEWHTPIGPDDEVEFLNE
Ga0302201_100131648F010891AGGAGMTTKKQLTPEQIAVLNLMVNGAFSSIAIHAIGDRVSKGIHKGADATQFATDKTAYAAGTVQICAIPAAKHMWTGFTGLFVKKTAATPASV
Ga0302201_100131649F057821AGGAGMSIDMNLLSVNADALSTNQNSELPGWNVPSHMAFHIVFDGRLDINGKLNPVIRRPYRDTSRPYNQRRDFMAHETRQVLDDRMPAGVEYGIVTFDGGSKAAREETRRLVEHLSRGWTDNGKRFRCVYGHAADTGFMLFVDAKSSIHGPDDLGIHISSDPKAAKRVRRFFSA
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