NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302201_10079577

Scaffold Ga0302201_10079577


Overview

Basic Information
Taxon OID3300028785 Open in IMG/M
Scaffold IDGa0302201_10079577 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026465Metagenome197N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0302201_100795771F026465N/AGDAGLYDTVKKELRRMKSQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0302201_100795774F042119GAGMETIIREVNPARLAWGIFDHAKSDYVSEGDIQASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNESARAYRLCPLRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVKIVASQHEDVSEPQVQ
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