NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10014785

Scaffold Ga0307517_10014785


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10014785 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10446
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000510Metagenome1067Y
F038486Metagenome165Y
F059498Metagenome133Y
F096511Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_100147852F000510N/AMIRNLGGVWTLSKLKQKKTENYQAKLNKIKKLSREQTLLTSKRPPTEIKTDHGNETSIYILNIYIFFTLVS
Ga0307517_100147853F059498AGGLCDRDIATNFDAVAGEVILVDSCAVIFICCDFYLFFLKKKETKFLLAAVLFIYGCGTVHNKFFGGIRYRPFVS
Ga0307517_100147855F038486N/AMLMQLMEDSTDSPSVNMIPFPTRTIPDGEIIPTYIMGTSLNKAIKADSSILMDFNPNRIIKQDNPLHS
Ga0307517_100147859F096511GAGLKTANTKIDCGKDTLSMEVRDEKIEFNFHDAMKYPYNNVYSIKFYDQVHKCVQQVFDFDCENGLSVALSYDYDLPR
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