NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10029999

Scaffold Ga0307517_10029999


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10029999 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6394
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000433Metagenome1147Y
F024004Metagenome207Y
F027067Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_100299992F000433N/AMMFQFGLNQHLFSKLNPLFVFSISVVKLINQSFDLYDRPASNMNIYNKLKISYAIRLVIIKHAQVREFNDTLSAI
Ga0307517_100299994F024004N/AMNLNPILKSSIACEYKTNLGGFQVQNVIFLDCPTMIALDFCARSYSHFKFGLFMFQLRSENVC
Ga0307517_100299995F027067N/AMGKALNGSFDIGLLEFGLIMQLSEEIDGVYGQNSR

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