NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307504_10017834

Scaffold Ga0307504_10017834


Overview

Basic Information
Taxon OID3300028792 Open in IMG/M
Scaffold IDGa0307504_10017834 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1722
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020474Metagenome224Y
F029292Metagenome189N
F033381Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0307504_100178342F020474AGGAGGVSQEDMQDIEVGEPIYECPDCGSVTIRGKWSIEGARTLTDPACKLRDYAHELEHMRASGLELASPVEADYGIVRPGGVLSDEDTEDDE
Ga0307504_100178343F033381GAGMEEDWRRVVDGQWLQDCMEEWRDWGYLVMRAKWTMDGATTLAEVAPRFRERAEEFDELARAGFELEQPVDDDYAFLVRPGEESPMRLVEEDE
Ga0307504_100178344F029292AGGVTEDELREYMEEWRDFGYLFIRARWTMDGARTLAEAARCFRDRAETLEQLARAGFELDQPADNGFAVAIRPGEESPMRLVEGDVETGS
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