NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307504_10106078

Scaffold Ga0307504_10106078


Overview

Basic Information
Taxon OID3300028792 Open in IMG/M
Scaffold IDGa0307504_10106078 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)902
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F047850Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0307504_101060781F005023N/AAWNDPQAGTGFTIYGDYSRPNSNAGGGTAFGGRVTLGAGVFTLTGGVSSWDPDVVTERLLTIGGTAAFRLLGGSLIPVAVNLQLGGGHSLEITSSTTTLPVQTTLLAAVGLSVPLPTPVVRVEPYVSPGIRYHHYSNVAAGAADHETHFGWVVGGNLEFGPIGIHLAYDSEKFDDGTRHGVFGVGASLGLRP
Ga0307504_101060782F047850AGGAGVIRFLVSRGSVLVLALTLSGCALTLDATHLGVPVSLASTAQRPDSGTPFRVTKHAIYMLLGLVRVAQPNLEDVLA
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