Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10000075 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	228746
Total Scaffold Genes	260 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	107 (41.15%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

228746

Total Scaffold Genes

260 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

107 (41.15%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F022123	Metagenome	215	Y
F059517	Metagenome	133	Y
F060560	Metagenome	132	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_10000075157	F081952	N/A	MVNGPKKNLSLLPADKYGKSTERSTPRRHQANEPQSGLEAEQVGALGALRSLRSNKTLLAGKQPETHFLSNEEKQK
Ga0307515_10000075214	F022123	N/A	MFATIALTSYHDLPDLISVSTHSDPHSRMXEYNRDCTSRTNWFDFAGTHCSLSEPEPFNAFGSIEGLLNTEEDGLILPTYFWEQSDIPSPWNIYWTEATAYGGGLELDNPVFGNSWAKYWGAHTWFDCDPELPXECEGCNCLGTNSTEGHAPAAVATAKRAPVPLIVIEPPTPTPSEIDLYNWDW
Ga0307515_1000007531	F060560	N/A	MITCTALRHALVEWQMNKGVHPKAFMSKLKADRPDHSNYFNYKNDGGKNAPCCAATGRKLLTSTGVADMYTFVMNTWNTLPVTYQQTVYKNTLATVKCQIHHAENTKPAEVISVEAAHGNNHILVDYFTPKVALEEPEIESTDPNSPIDTNCTDDEL
Ga0307515_1000007574	F059517	GGA	MLKQQHILDIARSTGYQVGAQVDKVKLHFIQSAREHIVELYDLHRFESDAEHLEFIDSHLADNNYHFPVAEHLELGVSGPNPTQRESKAAIK
Ga0307515_1000007575	F060560	N/A	MQAGAILGCIYIKFYHRANNRGKYADGSYNSMVDNKDSHIPLPLIMFTCTELRHAPREWQKKKGVHPKASKSMQNQDRPDCLNYFDYKNDGGKNESCCTATGCMLXTSPGVPDMYTFLMNTWNTLPESYQQRVYKNTPATVKHQIQQVTNPKPAVVIRVEAAHVDNAILLDNLTSEVVLE
Ga0307515_1000007595	F006048	AGTAG	MLDNTCSKRYKVRVQVDKVKSHVIQSAKENIAEHYDLHCFESDAEHLEFIDSFLADNMYHLPVAEHVEGGVCGPDPMQKLSKAAKKWPVLTVLPGGHNPRVYLHQISSSGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10000075

Overview

Ecosystem & Geography

Associated Families

Sequences