NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10001525

Scaffold Ga0307515_10001525


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001525 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51803
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (55.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036505Metagenome169Y
F079414Metagenome115Y
F081952Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000152522F036505N/AMANVIQLALGEFMNSLGVKGRTKSWEAHEHYQQFGENENKHIGQSQRLRKEGNARINKVSAMKPGLAKIIEKVCISRYSENSETNYHIAANASCVDCVDTWSSKRVY
Ga0307515_1000152539F081952AGGMVNALKKNFSPLPAGKYGELTKMSTHRRHHVNEGTSGLEAERVRALGALRSLRSRKKHLAEKRQETHFLSNDEK
Ga0307515_1000152546F079414GGCGGMDLYQSSAVFAAILVLYTIAESPLERLLESLLESLLESLFESPLESLLERASHREE
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