NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10002032

Scaffold Ga0307515_10002032


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10002032 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44708
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (55.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000433Metagenome1147Y
F012990Metagenome275Y
F015421Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000203254F015421N/AMRVCSRTLSGRLFRKSSSFSENIAEEDNQSLYNENNRVRTLRNHMNPTRTSAPSCIVFPPDASHFNFKPDIIQLLPSFHGLDLEIHTYI
Ga0307515_1000203256F000433N/AMVFQFGLNQHLFPKLSPLFVFSISIVKLINQSFDLCDRSIFKMNIYHKLKVSYIIRHVIIKHALVKELLILHVQNDDIKS
Ga0307515_1000203259F012990GGAGMEGVVSLDNSVGAEIHGDGTIDLDYLVEAGSHSVSLDDLSIRGCMYWKRDHIYVGVVR
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