NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10008770

Scaffold Ga0307515_10008770


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10008770 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19647
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F038958Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000877019F008227GGALAGATSNTEILGTQQDRRHKLVHHDAADAATKHMTQDAHLKIVRKTGSRRNKKQHAVGCEYFHIDPIGGQLTV
Ga0307515_1000877023F038958N/AMTDVMASLFVDVHPSKAKLTLFRIGNYFLIASTVSAYALRQMLLRIVADSRTRSSRNDLYDRPSSRFDIAFHGICAETNPNMR
Ga0307515_1000877024F004778AGGALSLLNGRLLGITTDNASSNYSMTHELQSTVEASGIEWPALRNHIPYMAHVIQLALGAFMSSLGVKGRTMSGEAHEHDQQFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKIIEKVRIS
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