NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10100711

Scaffold Ga0307515_10100711


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10100711 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3495
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004021Metagenome456Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_101007112F004021GAGGMHQEEPSSASMIVEIAHQQTLGLLLSTCYCLVFALLLSDLYSEF
Ga0307515_101007113F004021GAGGMIQEEPSFASKIVKIAHQQTFGQLLAKCYCLVFELHDLYSEF
Ga0307515_101007114F004021GAGGMHQEEPSSASMIVKIAHQQTLGLLLSTCYYLVFALLLSDLYSEF
Ga0307515_101007115F004021GAGGMHQEEPSSASKIVKIAHQQTLGLLLSTCYCLVFELLLSNLYSEF
Ga0307515_101007117F004021GAGGMHQVEPSFAFKIVKIAHQQTLGLLLANCYCLVFELHDLYSEF
Ga0307515_101007118F004021GAGGMHQEEPSSASKIVKIAHQQTLGLLVSTCYCLVFKMLLSDLYSEFLLYLEL
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