NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10196292

Scaffold Ga0307515_10196292


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10196292 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1909
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000814Metagenome880Y
F016902Metagenome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_101962921F016902N/AMIFGTTGTQFSSKGLSVSCSLFAQKMSASAVELGFMDDFLGPGVLVFVNGF
Ga0307515_101962922F000814AGTAGLKISTSGVELGFEDHFWDNRDSVFIKGLSVRSSLFAQKMSASTIELGFLDDFLGPGVLVFVNGF
Ga0307515_101962923F016902GAGGLGLRGLVFINGLSVRISLFPQKMSASAVQLGFLDDFLGPRVLVFVNVF
Ga0307515_101962924F016902GAGGLGHRGLVFINGLSVSNSLFPLMMSASGVQLGFLDDFLGPRVLVFINGF
Ga0307515_101962925F000814N/AELGFEDHFWDNRDSVFIKGLSVRSSLFAQKMSASTIELGFLDNFLGPGVLVFVNGF
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