NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10245690

Scaffold Ga0307515_10245690


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10245690 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F006456Metagenome372Y
F056276Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_102456902F002798N/AMVSINHEDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHRAIHDSWPQFHKEHDRLSLGNLTIKDPVCQFLRKLDGKPIPDP
Ga0307515_102456903F006456N/AMDTTLEKLKKYFPALPQNAITKIYRARCARLRLLMNHGIPEDIRWLIEAKVRLSGESSNSFISYMPGTGKALLQRNVVQND
Ga0307515_102456904F056276N/AMRIGEEIQRREKEQRIAQIYTDISYYGKLKEPTEVTEYRYPPFDRDERLAKQESHQKETQ
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