NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307287_10079480

Scaffold Ga0307287_10079480


Overview

Basic Information
Taxon OID3300028796 Open in IMG/M
Scaffold IDGa0307287_10079480 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019305Metagenome / Metatranscriptome230Y
F065636Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0307287_100794801F065636N/AVAAGCARHTIPPVNLQPQIRLGPAQDFGPGIMDVTPSDVDVRLDLPGYVVALRVTKDFGVQVVAPLSGSPSSKRGAHYFRGGAPPASRTDTTLRAASSKGCTVRGDSRESCTGVAMPYRITQLKQGGAPDDAAGYWLLIVSDVPTPGREVMRRLGEMDLADESLEALVRSIPEPLIASRTAHWAAYYVAFGVPGTR
Ga0307287_100794802F019305GGAMIRRSLLFAALAVAAPAIGRAQVVQNVQGDVAHFGEGFTAITESRVDFRLLRPANVVLFWVTPAGRIDLFFPLRSRDKTLKRAGTNVISVSEIPSPLQAPVISGAPVSGRAGQFTPTGSLLTGAPAGADSGVSGYWVLLTSEAPITALDIQNKLAVMSREGGVAAIIDRLAPVLVPERAVWAQYVAGVVLR
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