NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10000103

Scaffold Ga0265301_10000103


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10000103 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)136674
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (43.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058536Metagenome135Y
F077963Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0265301_10000103158F077963N/AMKAMIRLFKRLLNFFNIHPDKNQRWTLSTVFVVGLLYTYVQPAITKAWVSELPAEWIAFQSLAYSICGLLIGMIWKGWVRRKAIQWFTILCIIESAAGFFVGMWLSFVEYNVWVLAIACLLYGTLISEFVGKCLMTFRPKLWNEHEREVYDNNNDVVCGIYCIVGYACSLLFMPSLQVAMFVWGLTCALDNIGWLVVYHKNRDKFREIENETTKEK
Ga0265301_1000010365F058536N/AMVKQLALSELRRVAEKTRLVKVKVPDGKGGFTLKEVLERVPWRVWYVSASNGDVIRGLECVTLAVDVDGPGAYPSRLVQFIASGQTRRLRDCCILQANDFKLVI

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