NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307284_10054118

Scaffold Ga0307284_10054118


Overview

Basic Information
Taxon OID3300028799 Open in IMG/M
Scaffold IDGa0307284_10054118 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1418
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y
F019580Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0307284_100541181F019580AGGCGGVYLKHLSSLQFLTYVSFFAVVMAALFKFVPGRSPPVRETPYPDDELHAHDPKAAKYFLAGGFFLVLGSLHMAVKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRIVGRPLASEGLAQCA
Ga0307284_100541183F001079AGAAGMAVDLTPSAPSALPYVSWSSWGMAVIPAADWPFVFGSMQALKGHVQEYPGCQKLEAFVEAEGADYRVHCYTTWDTPEQLEVFLERGYTFERMLADVAGIQAEAPRMMEKIF
Ga0307284_100541184F000805AGGAGMGMPSGESPQHAQQYYHYLQGHQETMQRPATWHVHWIDLAWLWGFVIALSFLLLLWIWQYRSTRQKAGPYPVDSFGGYTTELAGPATLFFVLFTVGVTAFAVVLVVGHLVWGQKF
Ga0307284_100541185F012223N/AAVVAFLAAWKAGHFHELDRMGGIPLLVHEEDYYTPEWALDEEEWADGDA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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