NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265338_10001966

Scaffold Ga0265338_10001966


Overview

Basic Information
Taxon OID3300028800 Open in IMG/M
Scaffold IDGa0265338_10001966 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32017
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040189Metagenome / Metatranscriptome162Y
F091014Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0265338_1000196641F040189AGGAGGVPSLTYTAPAYGTTDVLYGTGILFTASNPSPGVGATVPSDANLGVGSSWLGLGWNYVGATEAGVTQTYNPTTQNINIEEQPTPVGVAVNTADLTFTCNLSEETLANINLAYGNSGAIATTPAGAGQPGKSVLTLSTTFATLSAALIAKNAFGFATVLYIPVMISAGQVQTAFRRAAQQRLYPLTLSAICPFSAISFTQLTSVATS
Ga0265338_100019666F091014AGGAGGVIGRRVGSMAEIEQPGDYFGPVVGYTGDLPAVFFLKPNARDPEARPEARSVQHVCSPPHTFRECPDGSLEIRNSISNLLRGDPDGRTDDGWHGYLNEGHEWRQV
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