NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307305_10083373

Scaffold Ga0307305_10083373


Overview

Basic Information
Taxon OID3300028807 Open in IMG/M
Scaffold IDGa0307305_10083373 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042266Metagenome158Y
F058842Metagenome / Metatranscriptome134Y
F093638Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307305_100833731F093638AGGAMGFLTGLIWGLLIAAATVALEHYGPSSDPLHINLSGNGAIAAPVILVPLAIFWGWSSIANAYAGRSVVPIAAYTLALLLGVSLIGPADAFLFPQDSAQLGVNDLLAGLFQGCLF
Ga0307305_100833732F058842AGGAGGVKKLALAIGFAAYVVFGASSGSLAASKIDNGAGVSATRDSRIWSETATNARLLFVNEAFYPETAATASAVTSHGEQERADMAQTNTSSIETLRMIYGDGLGIEP
Ga0307305_100833733F042266N/AAINTVLNISFDFTLSGDAEMPDKSRLTTQMSLLGQSASIDTITIGGRTYTRGLLGGDWTESAADDPQGAIQGGVLDPLGQIDLTAVASVTEVDRPEIDGRKTRHLSYVIDQTKLLEKMKASPTGTTPSLIASGVAGKGEVWIRTDDNQIVRQLVNLSVDADGGLGIPGASPTAGFSRFEISFDIKFSHIGEPLSPAITAPPTR
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Institute for Fundamental Biomedical Research
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