NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307294_10188340

Scaffold Ga0307294_10188340


Overview

Basic Information
Taxon OID3300028810 Open in IMG/M
Scaffold IDGa0307294_10188340 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012035Metagenome / Metatranscriptome284N
F055861Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0307294_101883401F012035N/AFPHIPAKRERSSSSDEDPDVRSATEQVPTLPSASRSLSSAGARIRADHRALLPHWRYTAALIVGFVAVFMSPAGRDVEDVAQLERLVPKIERAQALSPEARETINRLIARQGTAGGRDDPSHQMRRKAAIERVTSAMQAKESIAAVSDVAAR
Ga0307294_101883402F055861AGGAGMRTIMAFGFTALLALLAIGVWSGATTHSVNRAEASAASSRLINPHELMRNSTNL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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