NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307302_10360139

Scaffold Ga0307302_10360139


Overview

Basic Information
Taxon OID3300028814 Open in IMG/M
Scaffold IDGa0307302_10360139 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023285Metagenome210Y
F026234Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0307302_103601391F023285GGCGGVSEELSARLRRVEQQVRVFKELHQSELQIILDELTDIAKQVEAERAAAAPPAQTSDVDPDDPAASSPKRAKWLAEQANKAAPTSRRELLFGERDRET
Ga0307302_103601392F026234N/AGFSPCDESVVTSNSQERLLVRAIVCAYTQAELPTPWLAIFHRFERVMQKAGLRVRVRLFPLEELPEGFEVLVVPPELQQAAEALQTGARIIVTTRAEAPAAADALLREIERGETLHAEKVRPGEPKIMTHRGGDIL

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