NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307296_10088368

Scaffold Ga0307296_10088368


Overview

Basic Information
Taxon OID3300028819 Open in IMG/M
Scaffold IDGa0307296_10088368 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000283Metagenome / Metatranscriptome1379Y
F000336Metagenome / Metatranscriptome1274Y

Sequences

Protein IDFamilyRBSSequence
Ga0307296_100883682F000283N/AMNAKAAKNLIIQNVFLCAAAIVITSCGTATFNKSGSNTTIESLRSFELAFIDEFAVPGKRFNAAAFDAKVNEGNAKFQQAIANEKFTARRPVLIDLKSQFDADATHLRSKASRGKVTPALATEMKKDVNKIYDHALGQQT
Ga0307296_100883683F000336N/AMPSDNKPKRRKPSPKKSELDSALDQVGDESVAAAMKEFQDLLAQAKGDTAEQIRQNADELERRLVLLKNGEIDKEDFDFFVENQKRDLRVFIDSQPAQSQERAEKLTLQILEIAVTKVVPVLIAMI
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