NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307296_10212999

Scaffold Ga0307296_10212999


Overview

Basic Information
Taxon OID3300028819 Open in IMG/M
Scaffold IDGa0307296_10212999 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018133Metagenome / Metatranscriptome236N
F041833Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0307296_102129991F041833GAGGMRGLSAAILVAVTAWAGTAISGDDAFKQAVNYVFSGNVEGRTPQLLISIVDENKCIISVETPGNSFLYYLKEIKPGSI
Ga0307296_102129992F018133AGGLHLLIRFLIAVECCTGALAEQNGLPRLIPLGCNFDGGLAWLALGKASAGPELDSFRVEIPDVDLERVDGTISPSSMDMFMPYGQGPVVGPISVSGISISPRIVDSGPNGNVVTVHFRILSTYSSPADFLKPAAISYVLVLNGKSTGCRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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