NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307312_10036942

Scaffold Ga0307312_10036942


Overview

Basic Information
Taxon OID3300028828 Open in IMG/M
Scaffold IDGa0307312_10036942 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2872
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019305Metagenome / Metatranscriptome230Y
F065636Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0307312_100369423F065636GAGGMLRNLPLSVLALLLVSAGCARHTIPPVTLQPQTRLGPAQDFGPGIMDVTPSDVDVRLDLPGYVVALRVTKDFGVQVVAPLSGSPSSKRGPHYFRGGAPPASRTDTTLRAASSKGCTVRGDSREACTGVAMPYRITQLKQGGAPDDAAGYWLLIVSDVPTPGREVMRRLGEMDLADESLEALVRSIPEPLIASRTAHWAAYYAAFGVPGTR
Ga0307312_100369424F019305GGAMTMRLLVAALALSAPARAGAQVVQNVHGDVAHFGEGFTAITDSRVDFRLLRPANVVLFWVTPEGRVDLFFPLRSRDKTLKRAGTNAISVSEIPSPLQAPVINGAPVSGRAGQFTPTGSLLTGAPARADSGVSGYWVLLTSESPITALDIQNKLAVMSRAGGAVAIIDRLAQVLVPESSVWAQYVAGVVLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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