NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265298_10001126

Scaffold Ga0265298_10001126


Overview

Basic Information
Taxon OID3300028832 Open in IMG/M
Scaffold IDGa0265298_10001126 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39286
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.63%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0265298_1000112610F057003N/AMASFIDVSGLTYCGQEAQEIFSKDIYDIDLRQYGVTFMDGVKGKMKIYNGEIGDVWQEYTCPFTPDGDVVLAEAFIEPAAIKVNMEECYDKFWNTFLVEQTSITLNGGIPQTFSEWFFDKLRKKMAKEYQEIAWMGDTGITSASTGYQYKKVTDGWEKQLASALTGATLSGNVVTLSALTVENVIGQVEDVIMKGIEVAAAQGVDTENYKLFMNHSDVRVLEVALGKVCCPNSVNQIFGNYARENGRIYVMGYEVVPTMQSRDKMIFGPASNLVLGYDTFDSHIEYKLIDMRNTTGDNTFRILAISNIAVGVVLPELFVLGKKSE
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