NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247610_10000061

Scaffold Ga0247610_10000061


Overview

Basic Information
Taxon OID3300028833 Open in IMG/M
Scaffold IDGa0247610_10000061 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171411
Total Scaffold Genes229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (28.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057815Metagenome / Metatranscriptome135Y
F063246Metagenome / Metatranscriptome129Y
F082004Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247610_10000061156F057815AGGAMTKKFKDSDILKAMAAKLDEDSVVYGANGHYAVGAYYDLTKVSSVFGDKDYNAQSNIDDADGTKAAELYRTDNDTLDEGLQKAEWIKNW
Ga0247610_10000061214F063246N/AMGKLKIELNDMQSLKDLLQEAYRISDEQMIQAQNEINKLSVASQLENEPMEARTKYAKAINDYLGMKDKAISKKLDIAKILADVLKSNGDVKDAFENGSNMKNMDFNFDDIKKMVDESYQGKEKTKTIELKK
Ga0247610_1000006150F082004N/AMAILHLNLTEDHLKLVRFLNIEDKDDDVLTINKNVMLTMQTHILDDVAMILGLKDKAIKGTEEDADGAAYPDDVEKYMLDTYHYVSDNMYLIETLLHQKVFEGVKPTKYKAKDSDMVWEEEV
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