NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302199_1126085

Scaffold Ga0302199_1126085


Overview

Basic Information
Taxon OID3300028860 Open in IMG/M
Scaffold IDGa0302199_1126085 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001769Metagenome / Metatranscriptome637Y
F027392Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0302199_11260851F027392AGGAGMKNGITAPPGYVLPNRPSWQGGWNIRSVVGAAIAFVLAASGATEWLAIQLNNPVEMGYPILWV
Ga0302199_11260852F001769N/ARLRHLKELGLSKPYDGARWLVRSDFVTQLQQMKDIQDRARTLFRCGVAISDPHTPMEYSTFSKKLIGRVLLNSEDERTGALQTLFETTEGKIEIIRHDATLRAAWARGDLEPGNVVTIDSLRGDPDKLYASTLGKDKDVLTDEKALGSIVRRMRSMNLATGESDKGWMGQLKSALRSRMTERTRDRGY
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