NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307314_10000002

Scaffold Ga0307314_10000002


Overview

Basic Information
Taxon OID3300028872 Open in IMG/M
Scaffold IDGa0307314_10000002 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108486
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (72.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F049823Metagenome146Y
F081191Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307314_10000002126F049823AGGGGGMLGTIAPEAVQGSIEVVHGVVPPEKIDDALRLLHLDLLQRGAVAEELGQWLWGTHWFPHLNERPEILALAESLPREWRAGRMCDPQILLQFPHTGAEPEITFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLVQTAEGPAPVEADPGDAIMMTPDLPHSGGVNRSGRLRYGVYFRWLTGG
Ga0307314_1000000216F031439AGGMYVIPIVLIILLALIAVAWSPIFALVFFVIGFVAFLAYAGVSRRSDEKLAPPEQPGRQPQHEAQGETGMWGERKPS
Ga0307314_1000000246F016854GAGMASSRLKTLPKPGEVWISCPPYLMMARIVAVDLNGESPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0307314_1000000248F081191GGAGGVAAIVALADDGFCRRSELALSFPRLESRDLRRALRRAVAQGLVIERRGPDGGFHVAVSSEGWNRHRNG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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