NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10000130

Scaffold Ga0307278_10000130


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10000130 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36919
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010122Metagenome / Metatranscriptome308Y
F011739Metagenome287Y
F063030Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_1000013017F011739AGGVSLGFVHACEQNHLNLSVVGGGGVVQLAAGKVVTSPVDPLFVYNFAFGVRLAYDAAGAEAAFKAAGRSYVHVLASPSSRPSLGDDLAGLGYRHAEDQAYRRTAGTGSGAPGLLALGDGDFEAFLEVWRDSWGADDETGGREEAYRRRFRDPRSRPYRTADGGGVLLLFDSGTTTQLCHFAVRRSAQGRGVGRRVLELARGLVPPGRPLWLFTAAGGSADRAAAAAGWELDHTASDWILELDPSPDRARPH
Ga0307278_1000013038F063030GGAGMCPTVLGRVQTRVAILVGPAILATILSLVTGDEGWIVTIGIYLLVGVALDTTFYPRVIRWQPPWLTFLLGVTEFVLVFVLVKVLKPGQPGFGDPDALLGPDDAKPILLFWVSWLLAVGTRIVVLPIVSLSWLENGGEFRITGWTVPPESEPLPLVAAATPDAAGGRLVRELSAVHDRPVERQPPLSGSHARPVSGSSPGR
Ga0307278_100001309F010122AGGMNRFEDAVARELRVRLEARTRSIRALARWAAASLPPGALVADGVALVLARLGDGDPDALAAQVMAEIPDRFGRHWESGPAH
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